Function reference • wallace

All functions

create_module(): Create a Wallace module

ecoClimate_getdata(): ecoClimate_getdata

ecoClimate_select(): ecoClimate_select

envs_ecoClimate(): envs_ecoClimate Obtain ecoClimate variables

envs_userEnvs(): envs_userEnvs

envs_worldclim(): envs_worldclim Obtain WorldClim variables

espace_nicheOv(): espace_nicheOv Niche Overlap

espace_occDens(): Occurrence density grid

espace_pca(): espace_pca Principal component analysis

model_bioclim(): model_bioclim Generate Bioclim model

model_maxent(): model_maxent Generate maxent.jar or maxnet model

occs_queryDb(): occs_queryDb Query online database for species occurrence records.

occs_userOccs(): occs_userOccs Loads user provided occurrence records

part_partitionOccs(): part_partitionOccs Partition occurrence data

penvs_bgExtent(): penvs_bgExtent Generate background extent

penvs_bgMask(): penvs_bgMask Mask environmental data

penvs_bgSample(): penvs_bgSample Sample background points

penvs_drawBgExtent(): penvs_drawBgExtent: Draw background extent

penvs_userBgExtent(): penvs_userBgExtent: user provided background extent

poccs_removeByID(): poccs_removeByID Remove occurrence by ID

poccs_selectOccs(): poccs_selectOccs Remove occurrences outside of polygon

poccs_thinOccs(): poocs_thinOccs Thin occurrences

register_module(): Register a Wallace module

run_wallace(): Run Wallace Application

vis_bioclimPlot(): vis_bioclimPlot Visualize bivariate plot of BIOCLIM model

wallace-package wallace: Wallace: A modular platform for reproducible ecological modeling

xfer_area(): xfer_area Transfer model to a new area

xfer_draw(): xfer_draw Draw extent of transfer

xfer_mess(): xfer_mess generate MESS map for transferred raster

xfer_time(): xfer_time Transfer model to a new time

xfer_userEnvs(): xfer_userEnvs Transfer model to user specified area and time

xfer_userExtent(): xfer_userExtent: user provided extent of transfer